In the bowl of a food processor, combine the drained and rinsed white navy beans, Greek yogurt, orange zest, chipotle purée, fresh lime juice, and sea salt.
Secure the lid and process on high until the mixture is completely smooth and creamy, scraping down the sides of the bowl as needed.
Transfer the puréed dip to a serving bowl.
Add the finely diced white onion and chopped cilantro.
Using a rubber spatula, gently fold the onion and cilantro into the dip until just combined.
Serve immediately or chill until ready to serve.